Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs111593423 chr20:6008226 A/C 0 176 25.53 23.08 2.93 KM Plot
PCPG rs111634163 chr2:24272657 C/T 0.000122 176 25.28 27.52 17.43 KM Plot
PCPG rs111643226 chr13:54161194 C/T 0.000228 177 25.77 20.17 3.17 KM Plot
PCPG rs111652870 chr7:36152009 T/C 0.000433 177 25.87 24.5 14.37 KM Plot
PCPG rs111662410 chr3:195784046 G/C 3.0E-8 175 24.52 32.92 10.57 KM Plot
PCPG rs111690269 chr19:14728302 T/C 6.41E-6 174 25.6 24.1 25.17 KM Plot
PCPG rs11170393 chr12:53462596 C/T 4.97E-11 178 5.87 24.88 25.53 KM Plot
PCPG rs11170414 chr12:53500145 C/T 1.19E-10 175 25 27.08 3.05 KM Plot
PCPG rs11170415 chr12:53500267 C/G 1.19E-10 175 25 27.08 3.05 KM Plot
PCPG rs11170416 chr12:53500346 A/C 1.19E-10 175 25 27.08 3.05 KM Plot
PCPG rs11170417 chr12:53500947 C/T 1.19E-10 174 25.08 27.08 3.05 KM Plot
PCPG rs11170418 chr12:53500948 A/G 1.19E-10 174 25.08 27.08 3.05 KM Plot
PCPG rs11170419 chr12:53502789 A/G 1.19E-10 174 25.08 27.08 3.05 KM Plot
PCPG rs11170420 chr12:53504257 C/T 1.19E-10 174 25.08 27.08 3.05 KM Plot
PCPG rs111705570 chr7:1106742 G/A 0.000262 173 25.87 24.95 49.58 KM Plot